GeoEco.Datasets.Virtual.DerivedGrid
- class GeoEco.Datasets.Virtual.DerivedGrid(grids, func, displayName, dataType=None, noDataValue=None, queryableAttributes=None, queryableAttributeValues=None, allowUnmasking=False)
Bases:
GridA
Gridthat that derives its values from otherGrids with a function you provide.- Parameters:
grids (
listofGrid) – List of one or moreGrids from which values will be derived. Minimum length꞉ 1.func (
function) –Python function or lambda with the signature
func(grids, slices)and the parameters:slices -
tupleofsliceorintthat define the slices of data to be returned as a numpy array. These may be used to retrieve the values of each grid i like this:grids[i].Data.__getitem__(slices).
func should return a numpy array of derived values for the range specified by slices. Usually, this involves retrieving the data from the grids for those slices and then performing a mathematical calculation. For example, if you have a grid representing sea surface temperature values in kelvin and you want to convert them to degrees Celsius, you could define this function:
def k2C(grids, slices): return grids[0].Data.__getitem__(slices) - 273.15
Then, you could construct your
DerivedGridlike this:celsiusGrid = DerivedGrid(grids=[kelvinGrid], func=k2C, displayName=kelvinGrid.DisplayName + ' in C')
Sometimes you may need to derive values from multiple grids. For example, if you have grids representing horizontal and vertical components of water velocity, commonly symbolized u and v, respectively, and want to compute the magnitude of velocity using the Pythagorean theorem:
def mag(grids, slices): u = grids[0].Data.__getitem__(slices) v = grids[1].Data.__getitem__(slices) return (u**2 + v**2)**0.5
You could construct a magnitude grid like this:
magGrid = DerivedGrid(grids=[uGrid, vGrid], func=mag, displayName='current magnitude', noDataValue=-9999.)
Here, we decided to set the
NoDataValueofmagGridto be-9999.We could have omitted that line, in which case the NoDataValue would have been set touGrid.NoDataValue.Note that
DerivedGridautomatically coerces the values returned by func to theDataTypeof the firstGridin the grids, and automatically sets any cells to NoData that are NoData in any of the grids. Use dataType and allowUnmasking to override these behaviors.displayName (
str) – Informal name of this object, suitable to be displayed to the user. Minimum length꞉ 1.dataType (
str, optional) – Numeric data type of the data returned by this grid. If not provided orNoneis provided, theDataTypeof the firstGridin grids will be used. Allowed values꞉'int8','uint8','int16','uint16','int32','uint32','float32','float64'. Case sensitive.noDataValue (
object, optional) –int,float, or single-element numpy array giving the value that indicates that cells of of this grid should be interpreted as having no data (these are also known as missing, NA, or NULL cells). If not provided orNoneis provided, theNoDataValueof the firstGridin grids will be used.queryableAttributes (
tupleofQueryableAttribute, optional) – Queryable attributes defined for this object.queryableAttributeValues (
dictmappingstrtoobject, optional) – Values of the queryable attributes, expressed as a dictionary mapping the case-insensitive names of queryable attributes to their values.allowUnmasking (
bool, optional) – If False, the default,DerivedGridwill automatically set a cell to NoData if it is NoData in any of the provided grids. This is done as a convenience, so your func does not have to handle the grids having NoData values. If True,DerivedGridwill not automatically set any cell to NoData, and you must ensure that func does so appropriately.
- Returns:
DerivedGridinstance.- Return type:
Properties
- property CenterCoords
(
object) Coordinates of the grid cell centers, indexed using the 1-character dimension of interest and optionally arangeto retrieve anumpy.ndarrayof coordinates (e.g.CenterCoords['x', 0:4]) or an integer to retrieve afloatfor a single coordinate (e.g.CenterCoords['x', 10]). Coordinates for thetdimension are returned asdatetimeinstances. Read only.
- property CoordDependencies
(
tupleofstr) Same length asDimensions. Dimensions that each dimension depends on for determining its coordinates.Nonefor dimensions that have a constant coordinate increment. Read only.
- property CoordIncrements
(
tupleoffloat) Same length asDimensions. Coordinate increment for each dimension.Nonefor dimensions that do not have a constant coordinate increment. Read only.
- property Data
(
object) This grid’s data, indexable using slices (e.g.grid.Data[:, 5:10, -10:]) or integers (e.g.grid.Data[0,1,-2]) or both in combination. Strides and negative indexes are supported in the traditional manner. If the grid is writable,Datacan be assigned to write values to the grid, e.g.grid.Data[0,1] = 5orgrid.Data[:,:] = numpy.zeros(grid.Shape). Returns and acceptsnumpy.ndarray,float, andint. Read only.
- property DataIsScaled
(
bool) If True, the underlying raw data are stored as theUnscaledDataTypeto save storage space and then transformed by a scaling equation on the fly when they are returned byData. The raw data can be accessed withUnscaledData. If False, the raw data are returned as is, with no transformation needed, andUnscaledDataTypeandDataTypeare the same, andUnscaledDatareturns the same values asData. Read only.
- property DataType
(
str) Numeric data type of the grid, after the scaling function (if any) has been applied to the raw data.numpy.ndarrays returned byDatahave this type. Read only. Allowed values꞉'int8','uint8','int16','uint16','int32','uint32','float32','float64'. Case sensitive.
- property Dimensions
(
str) Dimensions of this grid. Read only. Allowed values꞉'yx','zyx','tyx','tzyx'. Case sensitive.
- property DisplayName
(
str) Informal name of this object, suitable to be displayed to the user. Read only. Minimum length꞉ 1.
- property MaxCoords
(
object) Maximum coordinate value for each cell (i.e., the coordinates of the cells’ right edges), indexed using the 1-character dimension of interest and optionally arangeto retrieve anumpy.ndarrayof coordinates (e.g.MaxCoords['x', 0:4]) or an integer to retrieve afloatfor a single coordinate (e.g.MaxCoords['x', 10]). Coordinates for thetdimension are returned asdatetimeinstances. Read only.
- property MinCoords
(
object) Minimum coordinate value for each cell (i.e., the coordinates of the cells’ left edges), indexed using the 1-character dimension of interest and optionally arangeto retrieve anumpy.ndarrayof coordinates (e.g.MinCoords['x', 0:4]) or an integer to retrieve afloatfor a single coordinate (e.g.MinCoords['x', 10]). Coordinates for thetdimension are returned asdatetimeinstances. Read only.
- property NoDataValue
(
objectorNone)int,float, or single-element numpy array giving the value that indicates that cells ofDatashould be interpreted as having no data (these are also known as missing, NA, or NULL cells), orNoneif all cells must have data. Read only.
- property ParentCollection
(
DatasetCollectionorNone) ParentDatasetCollectionthat this object is part of (if any). Read only.
- property Shape
(
tupleofint) Same length asDimensions. Length (number of grid cells) of each dimension. Read only.
- property TCountPerSemiRegularPeriod
(
intorNone) Number of time slices per semi-regular period (i.e. per year).Noneif the grid’s dimensions do not contain atcoordinate or thetcoordinate is not semi-regular. Read only.
- property TIncrementUnit
(
strorNone) Unit of thetcoordinate.Noneif the grid’s dimensions do not contain atcoordinate. Read only. Allowed values꞉'year','month','day','hour','minute','second'. Case sensitive.
- property TSemiRegularity
(
strorNone) Type of semi-regularity used for thetcoordinate.Noneif the grid’s dimensions do not contain atcoordinate or thetcoordinate is not semi-regular. Read only. Allowed values꞉'annual'. Case sensitive.
- property UnscaledData
(
object) This grid’s data underlying raw data, before it has been transformed by a scaling equation.UnscaledDatais indexable using slices (e.g.grid.UnscaledData[:, 5:10, -10:]) or integers (e.g.grid.UnscaledData[0,1,-2]) or both in combination. Strides and negative indexes are supported in the traditional manner. If the grid is writable,UnscaledDatacan be assigned to write values to the grid, e.g.grid.UnscaledData[0,1] = 5orgrid.UnscaledData[:,:] = numpy.zeros(grid.Shape). Returns and acceptsnumpy.ndarray,float, andint. Read only.
- property UnscaledDataType
(
str) Numeric data type of the grid’s raw data, before it has been transformed by a scaling equation.numpy.ndarrays returned byUnscaledDatahave this type. If no transformation is needed (DataIsScaledis False), thenUnscaledDataTypeandScaledDataTypeare the same, andUnscaledDatareturns the same values asData. Read only. Allowed values꞉'int8','uint8','int16','uint16','int32','uint32','float32','float64'. Case sensitive.
- property UnscaledNoDataValue
(
objectorNone)intorfloatvalue that indicates that cells ofUnscaledDatashould be interpreted as having no data (these are also known as missing, NA, or NULL cells), orNoneif all cells must have data. Read only.
Methods
Closes any open files or connections associated with this object and releases any other resources allocated to access it.
Converts a spatial reference from one format to another, such as an OGC WKT string to a Proj4 string.
Deletes the lazy property with the specified name.
Returns a list of all queryable attributes.
Given a
tupleorlistof coordinates, returns alistofintindices intoDatafor the cell that contains the coordinates.Returns the value of the lazy property with the specified name.
Returns the queryable attribute with the specified name.
Returns the value of the queryable attribute with the specified name.
Returns a list queryable attributes having the specified data type.
Returns the spatial reference of this dataset.
Returns True if the specified lazy property has a value.
Sets the lazy property with the specified name to the specified value.
Sets the spatial reference of this dataset.
Tests whether a capability is supported by this class or an instance of it.